The basic frame is the same from 98 to 08 except for the top motor mount on the 08 frame. But I never did the swap so there may be some small discrepancies that need to be dealt with.
If you already have the 96 inch with the 6 speed trans and you are doing the work yourself you should give it a try.
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08 FLTR candy red sunglo,with 2015 103 HO, V&H Dresser Duals with Monster Rounds, Power Vision tuner, Willy Shiny Wheels and Forks and a bunch of other stuff.